PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 223aa    MW: 25437.5 Da    PI: 10.1823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124555genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.54.6e-212976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++ +G ++WktIa++ g++R++k+c++rw++yl
    MDP0000124555 29 RGAWTAEEDQKLAEVIEIHGAKRWKTIASKAGLNRCGKSCRLRWLNYL 76
                     89********************************************97 PP

2Myb_DNA-binding52.98.5e-1782127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
    MDP0000124555  82 RGNISEQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5242480IPR017930Myb domain
SuperFamilySSF466894.12E-3027123IPR009057Homeodomain-like
SMARTSM007173.0E-172878IPR001005SANT/Myb domain
PfamPF002492.6E-192976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-253083IPR009057Homeodomain-like
CDDcd001675.87E-123176No hitNo description
SMARTSM007178.1E-1681129IPR001005SANT/Myb domain
PROSITE profilePS5129420.43881131IPR017930Myb domain
PfamPF002495.0E-1582127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2584132IPR009057Homeodomain-like
CDDcd001673.81E-1086127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDPVTKGSIN RRKVKGVEAM KNTKREVNRG AWTAEEDQKL AEVIEIHGAK RWKTIASKAG  60
LNRCGKSCRL RWLNYLRPNI KRGNISEQEE DLIVRLHKLL GNRWSLIAGR LPGRTDNEIK  120
NYWNSHLSKR MNQKEKQNGA NLTRQMISTD HQKDRVQMKE DSSSEEGATS TSTSTTSAAS  180
KGGDQNSNIN IDVDDFFDFS NEGLLNLEWV SKFLGQDDGR WFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-302613124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391385.11e-165PREDICTED: transcription factor WER-like
SwissprotQ9SEI09e-55WER_ARATH; Transcription factor WER
TrEMBLM5WVH01e-119M5WVH0_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g01380.t014e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.16e-55myb domain protein 66